PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8689s0019.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 403aa    MW: 45316.6 Da    PI: 6.6364
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8689s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.4e-344599155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl
  Araha.8689s0019.1.p 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.15542102IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-3243100IPR009057Homeodomain-like
SuperFamilySSF466892.51E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-2445100IPR006447Myb domain, plants
PfamPF002491.1E-104798IPR001005SANT/Myb domain
PfamPF143791.1E-25146192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MYYQNQHQGK SILSSSRMPI HSERNPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV  120
EENPPEVDES HSESLSIGPQ PTMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSILEKAQ ETLGRQNLGA AGIEATKAQL SELVSKVSAE YPDSSFLEPK ELQNLRHQQM  240
QTAYPPNSSL DSCLTSSEGN QKAPKMLDNR LGLRTYIGDS TSEQKEIMEE PFFHRMELTW  300
AEEVSLRESN NRPYLSTMAN NAEPRISSSR RSPGRLSIGV GVHEHRGGSS NNSEYTEERF  360
NENGEDCKLE THTRTALDLN THDENYGTTR PKQFDLNGFS WN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0034210.0BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197325.10.0myb-related protein 1
RefseqNP_974798.10.0myb-related protein 1
TrEMBLQ9FK470.0Q9FK47_ARATH; Myb-related protein 1
STRINGAT5G18240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.40.0myb-related protein 1